Home About Project EST Assembly Order and Download Outreach Tutorial

Arizona Genomics Institiute   ~   Arizona Genomics Computational Laboratory   ~   Stanford University

This project has been funded by NSF award # 0501857 (PIs: Y. Yu, C. Soderlund, V. Walbot), which will generate ~30,000 maize FLcDNA sequences. The project will use genomics tools to understand a fundamental biological process through identificaion of genes expressed during maize reproduction and in somatic tissues responding to abiotic perturbations such as heat, cold, salt, UV-B, drought, and lack of light. See objectives for detailed information.   Points of Interest We have submitted 366,390 ESTs to GenBank (Aug 06): Library #1 has 243767 reads of which 209140 are paired reads. Average length after trimming is 663 bases. Library #2 has 122622 reads of which 109350 are paired reads. Average length after trimming is 731 bases. See Outreach Tutorial, which includes: FLcDNA Tutorial, Why FLcDNA, Transgenic Plants Approach, Glossary, Resources The PAVE EST assembly (Apr 09 New version): The assembly contains maize ESTs from GenBank segregated by library. Download initial 10317 GenBank FLcDNAs Download 2nd submission of 2466 GenBank FLcDNAs Download 3rd submission of 4183 GenBank FLcDNAs Download 4th submission of 5530 GenBank FLcDNAs NEW!  Download 5th submission of 4959 GenBank FLcDNAs  NEW!

Last Modified: 23 Sep 2008