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27k FLcDNA
| strict assembly
| Our finished maize FLIcDNAs
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69k FLcDNA
| strict assembly
| All maize FLIcDNAs in GenBank, trimmed
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69k FLcDNA
| semi-strict assembly
| All maize FLIcDNAs in GenBank, trimmed
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69k FLcDNA
| loose assembly
| All maize FLIcDNAs in GenBank, trimmed
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| 76k FLcDNA
| loose assembly
| The 69k FLIcDNA plus our 7k unfinished
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| 358k EST
| used for 27k FLcDNAs
| ZM_BF ESTs
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| 797k EST
| segregated by library
| GenBank ESTs
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| Genome Browser
| 76k FLcDNAs aligned
797k EST contigs aligned
| links back to 76k FLcDNA
links back to 797k EST contigs
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| SyMAP
| Synteny Browser
| Zea Mays compared to several
important cereal grasses
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Naming in the 69k and 76k FLIcDNA assemblies
| | Prefix | #FLIcDNAs | Reference
| | BC_ | 27,455 | Soderlund et al. [4]
| | ZM_ | 7,903 | Soderlund et al. [4]
| | F_ | 36,316 | Alexandrov et al. [1]
| | M_ | 3,370 | Lai et al. [3]
| | W_ | 2,073 | Jia et al. [2]
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References
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Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, et al. (2009) Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol Biol 69: 179-194. (download list of
best 9951).
- Jia J, Fu J, Zheng J, Zhou X, Huai J, et al. (2006) Annotation and expression profile analysis of 2073 full-length cDNAs from stress-induced maize (Zea mays L.) seedlings. Plant J 48: 710-727.
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Lai J, Dey N, Kim CS, Bharti AK, Rudd S, et al. (2004) Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Genome Res 14: 1932-1937.
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Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, et al. (2009)
Sequencing, Mapping and Analysis of 27,455 Maize Full-length cDNAs. PLoS Genetics, 5:e10000740.
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