Arizona Genomics Institiute   ~   Arizona Genomics Computational Laboratory   ~   Stanford University 

 
Zea mays assemblies
27k FLcDNA strict assembly Our finished maize FLIcDNAs
76k FLcDNA loose assembly All FLIcDNA plus our 7k unfinished
797k EST segregated by library GenBank ESTs
Genome Browser 76k FLcDNAs aligned
797k EST contigs aligned
links back to 76k FLcDNA
links back to 797k EST contigs
SyMAP Synteny Browser Zea Mays compared to several
important cereal grasses

 
Naming in the 76k FLIcDNA assemblies
Prefix#FLIcDNAsReference
BC_ 27,455 Soderlund et al. [4]
ZM_ 7,903 Soderlund et al. [4]
F_ 36,316Alexandrov et al. [1]
M_ 3,370Lai et al. [3]
W_ 2,073Jia et al. [2]

 

References
  1. Alexandrov NN, Brover VV, Freidin S, Troukhan ME, Tatarinova TV, et al. (2009) Insights into corn genes derived from large-scale cDNA sequencing. Plant Mol Biol 69: 179-194. (download list of best 9951).

  2. Jia J, Fu J, Zheng J, Zhou X, Huai J, et al. (2006) Annotation and expression profile analysis of 2073 full-length cDNAs from stress-induced maize (Zea mays L.) seedlings. Plant J 48: 710-727.

  3. Lai J, Dey N, Kim CS, Bharti AK, Rudd S, et al. (2004) Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Genome Res 14: 1932-1937.

  4. Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, et al. (2009) Sequencing, Mapping and Analysis of 27,455 Maize Full-length cDNAs. PLoS Genetics, 5:e10000740.
Last Modified: 28 May 2010