PAVE: Zea mays ESTs

797k Genbank ESTs - trimmed
PAVE Information	Download Library Sequences
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Assembly Overview:

Date of Assembly: 2009-02-16

Contigs:

Number of Libraries: 84

Singletons: 36780

Number of ESTs: 797619

UniTrans: (Ctgs + Singles)

Multi-Library Contigs: 38068

UniTrans = Unique Transcripts

Annotation Summary:

Source(s) of Annotation: plants_sp, plants_tr

UniTrans w/ UniProt (UP): (67%)

Date of Source(s): 2009-06-17, 2009-06-17

Contigs w/o UP:

UniTrans w/ only MAIZE UP:

Top Plant UP Count:

UniTrans w/ UP but no MAIZE UP:

Best UniProt Count:

Best = UP is top match for a UniTrans w/ 1e-40 or better

Potential Contamination:

Top = UP is top-scoring match for a UniTrans

Library Descriptions

Zea mays ESTs libraries (87982 UniTrans)

Library	Title	Cultivar	Tissue	# ESTs	# Contigs^*	# Unique Contigs^**	# Singletons
L04	UGA-ZmSAM-XZ2 Src: Schnable,P.S. (2005)	inbred B73	Vegetative Shoot Apical Meristem (SAM) and leaf primordia staged P1-P4	30587	11102	229	1261
L05	Maize Endosperm cDNA Library Src: Arruda,P. (2005)	F-352 near isogenic line	endosperm	30180	8543	300	4542
L06	3530 - Full length cDNA library created by Invitrogen from multiple tissues Src: Walbot,V. (2004)	B73	multiple	24475	9342	9	242
L07	ISUM5-RN Src: Schnable,P.S. (2003)	B73	mixed	19987	4384	422	722
L08	946 - tassel primordium prepared by Schmidt lab Src: Walbot,V. (2002)	OH43	tassels	19396	6572	203	519
L09	3529 - 2 mm ear tissue from Schmidt and Hake labs Src: Walbot,V. (2003)	B73	ear	18465	5060	120	259
L10	Normalized cDNA library from mix tissues of maize Src: Li,Y. (2006)	(none)	mix tissues (leaf, stem, floral bud)	13909	5184	118	4311
L11	GeneTag2 Src: Genoplante. (2003)	mixture	(none)	13263	5174	190	1968
L12	952 - BMS tissue from Walbot Lab (reduced rRNA) Src: Walbot,V. (2002)	BMS (Black Mexican Sweet)	suspension culture	12580	3978	533	467
L13	Zea mays embryo sac cDNA library Src: McCormick,S. (2007)	A188	(none)	10422	4176	110	1034
L14	Endosperm_4 Src: Messing,J. (2003)	W22	Endosperm of 7-23DAP	10137	3312	53	721
L15	949 - Juvenile leaf and shoot cDNA from Steve Moose Src: Walbot,V. (2002)	W64A	immature leaf primordium and vegetative meristem	9516	3352	34	154
L16	ISUM4-TN Src: Schnable,P.S. (2006)	B73	Seedling and silk	8957	4627	50	539
L17	1091 - Immature ear with common ESTs screened by Schmidt lab Src: Walbot,V. (2002)	OH43	Inflorescence meristem - floral organ primordia	8584	3522	51	194
L18	947 - 2 week shoot from Barkan lab Src: Walbot,V. (2002)	B73	leaf and stem, including leaf base	7666	2573	71	231
L19	Endosperm_3 Src: Messing,J. (2003)	W22	Endosperm of 7-23DAP	6442	1841	50	433
L20	605 - Endosperm cDNA library from Schmidt lab Src: Walbot,V. (2000)	Ohio43	nucellar, embryo, and endosperm	6330	2872	32	338
L21	zmrsub1 Src: Nguyen,H.T. (2006)	(none)	(none)	6269	3950	26	495
L22	zmrws48 Src: Nguyen,H.T. (2003)	(none)	(none)	5369	3474	17	340
L23	606 - Ear tissue cDNA library from Schmidt lab Src: Walbot,V. (2000)	Ohio43	mixed	5326	2440	19	216
L24	zmrws05 Src: Nguyen,H.T. (2004)	(none)	(none)	5183	3420	17	231
L25	Zea mays sperm cell cDNA library Src: McCormick,S. (2006)	A188	(none)	5128	1656	217	1583
L26	Zea mays egg cell cDNA library Src: McCormick,S. (2007)	A188	(none)	4973	2299	75	587
L27	zmrww00 Src: Nguyen,H.T. (2004)	(none)	(none)	4691	3070	2	224
L28	660 - Mixed stages of anther and pollen Src: Walbot,V. (2000)	Ohio43	whole premieotic anthers to pollen shed	4464